Center for Computational Molecular Biology

Honors Thesis Archive

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Honors Thesis Archive

A small selection of past honors thesis projects presented by our students prior to graduation

A Bioinformatic Exploration of Unique Biological Features in Sciara Coprophila

A Hi-C map of the Senescent Genome at Kilobase Resolution Reveals Novel Associations between Chromatin Changes and Gene Expression

Alternative Splicing Analysis of Tripeptidyl Peptidase 1 Mutations in CLN2 Batten Disease Models

Approaches in Genomic Privacy

coiaf: Complexity of Infection Estimation with Allele Frequencies

Comparative Analysis of Fusion Detection Algorithms

Complexity of Infection Estimation with Allele Frequencies

Deep Generative and Predictive Modeling of Single Cell RNA-Seq Time Series Data

Entropy Analysis of m6A Transcriptomic Profile in Entacapone-Treated Glioblastoma Stem Cells

Evaluation of Quantitative Magnetic Resonance Imaging to Predict Intracranial Hypertension in Neonate by Machine Learning

Explaining Patterns of Widespread Loss of Heterozygosity in Cancer

Exploration of Possible Molecular Mechanisms of Action of Clinical Effects of Opiods in Lung Adenocarcinoma and Triple Negative Breast Cancer through RNA Sequencing

Exploring Graph-Based Neural Networks for Modeling Long-Range Epigenetic Gene Regulation

HapROSE: A Software Package for Long Range Haplotype Phasing

Identifying Opiod and Illicit Drug Use from Adverse Event Reported Outcomes Using Machine Learning

Identifying Opiod and Illicit Drug Use from Adverse Event Reported Outcomes Using Machine Learning (PowerPoint)

Image-Like Graph Representations for Improved Molecular Property Prediction

Multi-locus Informativeness: A Novel Method for Fine-Mapping Disease-Causing Variants in Genome-Wide Association Studies

Pipeline to Identify Shared and Distinct Genomic Signatures from Multiple Expression and Protein-DNA Interaction Data Sets Over Time

Post-Infarction Dysregulation of Cardiac Redox Balance: Novel Avenues for Cardiovascular Disease Treatment

Structure and Dynamics of RNA Polymerase II C-Terminal Domain in Complex with Cancer-Linked FET Protein Assemblies

Temporal Haplotype Changes of Vaccine Candidates for Malaria

The Effects of Genetic Variants on Protein Structure and their Associations with Preeclampsia

Towards Unifying Tagging SNP Selection Algorithms

Transcriptome Analysis of the Christianson Syndrome Mouse Model

XvsY: Pipeline to Identify Shared and Distinct Genomic Signatures from Multiple Expression and Protein-DNA Interaction Data Sets over Time